Package: RuHere
Title: Flags Spatial Errors in Biological Collection Data Using
        Specialists' Information
Version: 1.0.1
Authors@R: c(
    person("Weverton C. F.", "Trindade", email = "wevertonf1993@gmail.com", role = c("aut", "cre"),
    comment = c(ORCID = "0000-0003-2045-4555")),
    person("Fernanda S.", "Caron", email = "fernandadesouzacaron@gmail.com", role = c("aut"),
    comment = c(ORCID = "0000-0002-1884-6157")))
BugReports: https://github.com/wevertonbio/RuHere/issues
Description: Automatically flags common spatial errors in biological
        collection data using metadata and specialists' information.
        RuHere implements a workflow to manage occurrence data through
        six steps: dataset merging, metadata flagging, validation
        against expert-derived distribution maps, visualization of
        flagged records, and sampling bias exploration. It specifically
        integrates specialist-curated range information to identify
        geographic errors and introductions that often escape standard
        automated validation procedures. For details on the
        methodology, see: Trindade & Caron (2026)
        <doi:10.64898/2026.02.02.703373>.
Imports: Rcpp, terra, data.table, faunabr (>= 1.0.1), florabr (>=
        1.3.1), jsonlite, rgbif, rredlist, stringi, RPostgreSQL, DBI,
        ridigbio, fields, ggplot2, mapview, sf, ggnewscale
Suggests: pbapply, knitr, R.utils, rmarkdown, CoordinateCleaner
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends: R (>= 3.5)
LazyData: true
LinkingTo: Rcpp (>= 1.1.0), RcppArmadillo (>= 15.0.2.2)
VignetteBuilder: knitr
URL: https://wevertonbio.github.io/RuHere/
Config/pak/sysreqs: libabsl-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev libgdal-dev gdal-bin
        libgeos-dev make libharfbuzz-dev libicu-dev libjpeg-dev
        libpng-dev libtiff-dev libuv1-dev libwebp-dev libxml2-dev
        libssl-dev libproj-dev libsqlite3-dev libudunits2-dev
        libx11-dev zlib1g-dev
Repository: https://wevertonbio.r-universe.dev
Date/Publication: 2026-05-04 21:02:22 UTC
RemoteUrl: https://github.com/wevertonbio/ruhere
RemoteRef: HEAD
RemoteSha: e1fe28a9c64f4559a232a3dcaf7dc4f3486ca13c
NeedsCompilation: yes
Packaged: 2026-07-01 06:46:57 UTC; root
Author: Weverton C. F. Trindade [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2045-4555>),
  Fernanda S. Caron [aut] (ORCID:
    <https://orcid.org/0000-0002-1884-6157>)
Maintainer: Weverton C. F. Trindade <wevertonf1993@gmail.com>